Update packages/ Add org-ref

elpa/ess-20180611.502/etc/TODO.org

@@ -0,0 +1,200 @@
+* COMPLETION
+** DONE make eldoc automatically pick available sub-process           :13_09:
+   :LOGBOOK:
+   - State "DONE"       from "DONE"       [2013-06-26 Wed 16:51]
+   :END:
+** TODO make eldoc (actually ess--fun.start) work from withing strings
+* TRACEBUG
+** DONE put back ess-debug-goto-input-event-marker
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-06-21 Fri 01:18]
+   :END:
+   [2013-06-18 Tue] [[gnus:nnfolder%2Barchive:sent-2013-June#87sj0fulny.fsf@gmail.com][Email to Marius Hofert: Re: {ESS} A suggestion for deb]]
+** TODO make ess-selection-mode-map or just use ess-debug-mode-map
+   When recover mode is on, it would be very convenient to exit it with M-Q.
+   [2013-06-12 Wed]
+** DONE tracebug detects only english error messages.
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-06-21 Fri 01:18]
+   :END:
+   Try to solve with gettext R's functionality. Partially solved (for most
+   important cases) by relaxing regular expressions.
+
+** DONE C-c C-c with ess-inject-source=t deletes files faster than R can process
+   - State "DONE"       from "TODO"       [2013-06-26 Wed 16:46]
+   
+** DONE tramp references not found
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-08-12 ma 23:40]
+   :END:
+   [2013-07-08 ma] [[file:~/works/pbm/R/hierarchy.R::..st_is_old..%20<-][file:~/works/pbm/R/hierarchy.R::..st_is_old.. <-]]
+   
+** DONE watch window behaves unexpectedly
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2014-03-31 Mon 20:13]
+   :END:
+   [2013-06-27 Thu]
+* DEVELOPER  
+** DONE [#A] Eval in developer is broken
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-06-26 Wed 16:51]
+   :END:
+** TODO "initialize" method is not injected
+
+** DONE don't ask on C-t l for package if already in a package and dev is active
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-08-12 ma 23:42]
+   :END:
+   It interrupts the workflow unnecessarily and feels differently from C-c C-l
+   [2013-07-10 wo]
+   
+* SAS
+** DONE remote M-x ess-sas-interactive via shell with ssh
+  :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-08-12 ma 23:38]
+  :END:
+   sets ess-process-name-list to (("shell")) This prevents iESS[SAS] evaluation
+   since a value of (("SAS")) would be necessary for that.
+
+* INDENTATION
+** TODO closing ) match the function keyword
+   foo(a,
+       b
+   )
+
+   instead of current:
+   
+   foo(a,
+       b
+       )
+
+   And
+   
+   foo(
+     a,
+     b
+   )
+
+   instead of
+   
+   foo(
+     a,
+     b
+     )
+
+* EVALUATION
+** TODO implement block-based evaluation
+
+   >>>>> Peter Meilstrup on Fri, 10 Jan 2014 23:25:01 -0800 wrote:
+   >> 
+   >>> Over both eval-function (which doesn't usually do what I want when I
+   >>> have inner functions) and eval-paragraph (which doesn't when I put a
+   >>> line break in a function definition), I would prefer a command that
+   >>> did "evaluate all lines that include the top-level bracket enclosing
+   >>> point." That would be easy to implement using parse-partial-sexp and
+   >>> cover the case discussed here.
+   
+   >> I would be happy to implement this. Then we would be able to inject the
+   >> source code reliably. 
+   >> 
+   >> A bit of an issue is the paragraph evaluation. A common pattern in R
+   >> interactive code is to have a bunch of one-liners to be evaluated at
+   >> once. Top-level-form evaluation will break this pattern unless we expand
+   >> the evaluated region to the whole paragraph containing the form.
+   >> 
+   >> Sometimes I need to evaluate an inner form as well. A natural thing
+   >> would be to put it on C-u, but C-u is historically taken for a not very
+   >> useful visual evaluation toggling.
+   >> 
+   >> Any ideas/proposals are welcome.
+   >> 
+   >> Vitalie
+   >> 
+
+
+* MISC
+** TODO [#A] populate ess-autoload.el and call it from ess-site.el    :13_09:
+   This will ensure that very quick start both for (require "ess-start") and
+   MELPA users.
+** TODO [#B] build ert based unit test suit                           :13_09:
+** TODO split ess-mode into specialized derived modes
+** DONE set PAGER="cat" environment variable for tramp process if unset?
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2014-03-31 Mon 20:13]
+   :END:
+** TODO cleanup ESS namespace 
+   [2013-06-27 Thu]
+** DONE remove reference to ssh.el from manual + add tramp workflow
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-10-16 Wed 19:17]
+   :END:
+   [2013-07-10 wo] [[gnus:nnimap%2BSpinuVit:INBOX#51DD58EF.1010702@yahoo.de][Email from Jannis: Re: {ESS} ess-eldoc via ssh re]]
+** TODO check Rodney's report on bastard symlinks  
+   [2013-07-11 do]
+** DONE check if ess-remote works
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-10-16 Wed 19:17]
+   :END:
+   [2013-08-12 ma]
+
+** CANCELLED Help focus does not honor focus-follows-mouse/mouse-autoselect-window :CANCELLED:
+   :LOGBOOK:
+   - State "CANCELLED"  from "TODO"       [2013-10-16 Wed 19:16] \\
+     was not a bug:  said users may want to consider setting ess-help-pop-to-buffer to nil
+   :END:
+If you have focus-follows-mouse and mouse-autoselect-window set to t,
+then ask for help in an *R* buffer, i.e.
+> ?setwd
+
+The help buffer steals focus permanently instead of surrendering it
+to mouse movement; you need to physically click in the *R*
+buffer to restore the focus following the mouse.  C-c C-d C-d
+behaves similarly.  Ideally, we should respect the user's settings 
+of focus-follows-mouse/mouse-autoselect-window in this common 
+help/*R* buffer arrangement.
+** TODO Make an option to remember eval-and-go code in comint history
+** DONE DESCRIPTION file is killed if set to R-mode
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2013-10-16 Wed 18:15]
+   :END:
+** TODO eldoc should ignore some functions
+Some functions have no useful argument information to report and they
+should simply be ignored.  Ideally, this feature would be customizable
+so that each user could add their unfavorite functions.  To start, I
+would put suggest: (), c(), list(), sqrt(), t()
+** TODO ess-doc-map, ess-extra-map, and ess-dev-map  are present "everywhere"
+  notably in ess-help, inferior-ess, and ess-mode. It would be *really*
+  user friendly if we have a "submenu" for each of these maps, and them 
+  in both ESS and iESS (or all 4: ESS, iESS, ESS-help, ESS-transcript, ..).
+** DONE ess-execute-screen-options wrong in terminal
+   :LOGBOOK:
+   - State "DONE" [2014-03-31 Mon 20:11]
+   :END:
+   [2013-12-19 Thu] [[gnus:nnimap%2BSpinuVit:ESS#CAD%3D7RJZ4EHETKF4LPJpzuw0uO9AuzOtWDYVnV1cZAVQxAotVxg@mail.gmail.com][Email from Ali Tofigh: {ESS} ess-execute-screen-optio]]
+** TODO Implement "Extract Function" functionality
+   Proposed by Andreas Leha:
+   ,----
+   | RStudio can analyze a selection of code from within the source editor
+   | and automatically convert it into a re-usable function. Any "free"
+   | variables within the selection (objects that are referenced but not
+   | created within the selection) are converted into function arguments
+   `----
+** DONE > a + b + c is not cleaned correctly with C-u C-u C-y
+   :LOGBOOK:
+   - State "DONE"       from "TODO"       [2014-03-31 Mon 20:05]
+   :END:
+   While you are in this part of the code, can you add C-u C-u C-y to the ESS
+   menu item, although maybe it belongs on the Edit menu.  Not clear to me
+   which would be better.
+   
+   Thanks
+   Rich
+   [2014-02-20 Thu] [[gnus:nnimap%2BSpinuVit:ESS/ESS-core#CAGx1TMCSfK3XK6YghxomP03R_tFD2AiC4X%3D0NDcvoje%3D%2B9vMWw@mail.gmail.com][Email from Richard M. Heiberger: bug in ess-transcript-clean-re]]
+
+* RStudio (excerpts from Hadley's R-packages book)
+** TODO Build & reload
+   Available in RStudio via Cmd + Shift + B. This in- stalls the package,
+   restarts R, and then reloads the package with library() (doing this by hand
+   is painful).
+** TODO Jump to github file view. If lines are selected jump to those lines.
+   This is probably there in projectile.